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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015825133.1_cds_XP_016502225.1_15888
CDS Infomation

[gene=LOC107820448] [db_xref=GeneID:107820448] [protein=metacaspase-1-like isoform X2] [protein_id=XP_016502225.1] [location=join(91694..92099,92381..92699,93692..93782,93950..94126,94270..94326)] [gbkey=CDS]
Sequence

ATGATGTCTATGGCATGTCAAAAATGTCGTCTGCCACTGACACAGCCACCACATAGTCAA
CGGCTTCGTTGTGAGTGTAGCAATTTGATTCATCTAGGCAATAGTGATAGGTCACTGCAG
GTCCAAGAACGCGGTAGGATCAGTTCTAGAGTGAGAAGATTTCAGGATAAATTTAGGAGA
AATAGATCAAGAACTAAAAGTCTATCCCCTTCTCCTAGTGTTAGTCCTCGTTTATCTCTC
ATTTTCACAAAGCCACCACCGAGCGGGAAGCGCGCATTCCTTTGTGGAGTGACTTACAAG
AAGGAGAAGTTCAGGCTCAGAGGAACATTGCATGATGTAAACAGCATGAGGGACTTGCTG
GTCCAGAAATTTAACTTTTCAGATGAATCTATTCTCATTCTAGCAGAAGAAGAGGCGTAT
AAACCTCCAACCAGGAGAAACATATTAGAGGCTTTCAAGTGGCTGATGGCAGACCTTAAA
TCAGGTGACTCGTTGGTGTTCTACTTCTCAGGACATGGCTTACGACAACCTGATTTTAAT
GACGATGAAACAGATGGTTTTGATGAAACAATATGTCCTCTTGACTTTAGGACTAAAGGC
ATGATCATCGATAATGCCATCAATGATATTCTTGTTAAGCCTCTCATTTCTGGTGTCACA
CTTCATGCTATCATTGACTCTTGTCATAGTGGAACTGTTCTCGACTTACCTTGGGTCTAC
AAAGAACCCCGATCCGGCGCTAATAAGAGCACGAGTGGTGGAAGGGCCATTAGTTTCAGT
GCTTGCAAGGATAATCAACTAGCCGCAGATACCTCTGCTTTCTCTGCTGAAAAAACTATG
ACTGGTGCTATGACTTGCACATTTATTAGAGCTCTCAGGGAAAAGCCAGATATATCATAC
CAAGGGTTACTTGATTATATGCGCACGGCCATCGAAAAGGTCAACAATGCTAGATGTCCA
CTGCTGAAGGTATTCCAACGCAAGATAGACCAGGAACCAGTGTTATCATCTTCTGACAAA
TTTGACACTAATACAAAGTTCAAGCTCTAA

Peptide Sequence

PEP ID

XP_016502225.1
PEP Infomation

PREDICTED: metacaspase-1-like isoform X2 [Nicotiana tabacum]
Sequence

MMSMACQKCRLPLTQPPHSQRLRCECSNLIHLGNSDRSLQVQERGRISSRVRRFQDKFRR
NRSRTKSLSPSPSVSPRLSLIFTKPPPSGKRAFLCGVTYKKEKFRLRGTLHDVNSMRDLL
VQKFNFSDESILILAEEEAYKPPTRRNILEAFKWLMADLKSGDSLVFYFSGHGLRQPDFN
DDETDGFDETICPLDFRTKGMIIDNAINDILVKPLISGVTLHAIIDSCHSGTVLDLPWVY
KEPRSGANKSTSGGRAISFSACKDNQLAADTSAFSAEKTMTGAMTCTFIRALREKPDISY
QGLLDYMRTAIEKVNNARCPLLKVFQRKIDQEPVLSSSDKFDTNTKFKL

Transcript Sequence

Gene sequence data has not been registered.